Hi Chromehero,
when you open up task manager, is something like "SaH_5.15_SSE2-PM-Ben-Joe-2.0B.exe" running - and using up most of the available CPU resources?
You can open task-manager by right-clicking on an empty space in your task bar and choosing "task manager" from the pop-up.
Also, you can check whether BOINC says "found app_info.xml, using anonymous platform" on startup in the messages tab.
If all that's the case, then I'd just be patient - crunch times are variable using S@H enhanced, but they're definitely going to be quicker than using the stock app.
HTH,
Simon.